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These Broccoli Cheddar Quinoa Bites are cheesy, veggie-packed, and perfectly portioned for snacking, meal prep, or lunch boxes. Made with tender broccoli, fluffy quinoa, and two kinds of cheese, they’re flavorful, freezer-friendly, and so satisfying.

Pile of broccoli cheddar quinoa bites on a white surface with melted cheese visible on top.
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Egg bites are a classic grab-and-go recipe, but this quinoa and broccoli twist is one of my favorites. The quinoa adds a protein boost that makes them more filling, and the cheddar melts into every bite for warm, savory goodness. I make them for busy mornings, lunch boxes, and quick snacks, and they always disappear almost as soon as I set them out!

If you love easy, protein-packed breakfasts, try my Breakfast Egg Sandwich or Tortilla Egg Bake for something a little different but just as satisfying.

Recipe Overview

Skill Level
Intermediate
Prep Time
15 mins
Cook Time
20 mins

Before You Get Started

A few helpful tips before you dive in:

  • Chop the broccoli finely so it blends evenly into the mixture and bakes through without any raw bits.
  • Let the quinoa cool before mixing it with the eggs so you don’t accidentally scramble them.
  • Spray your muffin tin well. These bites love to stick if you skip this step.
  • If adding bacon or ham, cook it first and let it cool slightly before mixing it in.

Ingredients needed

Below is a list of the ingredients I used to make these quinoa egg bites. Full measurements are listed further down in the recipe card.

Ingredients to make quinoa egg bites.

Variations

→ Add extra protein by mixing in cooked, crumbled bacon or diced ham before baking.

→ Switch up the cheese – sharp cheddar, pepper jack, or Colby jack all work beautifully.

→ For a veggie boost, stir in finely chopped spinach, bell peppers, or zucchini.

→ Serve with a side of salsa or hot sauce for a little kick, or pair with a simple green salad for a light meal.

Common Questions

Can I use frozen broccoli instead of fresh?

Yes, just thaw it completely and pat it dry before chopping so the mixture isn’t watery.

Do these work without cheese?

You can skip the cheese, but they won’t have the same flavor or texture. Try adding nutritional yeast for a cheesy note.

How do I keep them from sticking to the pan?

A generous coating of cooking spray is key. You can also use silicone muffin cups for easy removal.

Can I use egg beaters?

Yes. If you do not have fresh eggs on hand, you can use egg beaters. You can start with 1/2 cup of egg beaters to replace the 2 eggs, and add in a bit more if the mixture is somewhat dry.

How to Make Broccoli Cheddar Quinoa Egg Bites

Follow these simple steps for bites that turn out golden and delicious:

process shot to cook the quinoa and chopping the broccoli.

1️⃣ Cook the Quinoa

Simmer broth and quinoa until tender, then cool slightly so it’s ready to mix.

✏️ Cooling first keeps the eggs from scrambling when added.

2️⃣ Prep the Broccoli

Finely chop broccoli so it bakes through quickly and blends evenly into each bite.

✏️ Thaw and drain well if using frozen.

process shot to mix the quinoa batter and baking them.

3️⃣ Mix It Up

Stir the cool quinoa, broccoli, cheeses, seasonings, and eggs until combined.

✏️ If the mixture feels dry, add another egg for better binding.

4️⃣ Fill and Bake

Press the mixture into greased muffin tin cups and bake until golden.

✏️ Cooling in the tin for a few minutes helps them hold their shape.

Close-up of a broccoli cheddar quinoa bite held between fingers, revealing cheesy, moist filling.

Storage & Make-Ahead Tips

  • Fridge: Store in an airtight container for up to 4 days – perfect for quick grab-and-go mornings.
  • Freezer: Freeze on a baking sheet, then transfer to a bag or container for up to 3 months. Thaw in the fridge overnight.
  • Reheating: Pop them in the oven to bring back that little crispy edge, or microwave if you’re in a rush.
  • Make-ahead: Bake a batch (this recipe makes 12 bites), let them cool completely, then store in the fridge for up to 4 days or freeze for up to 3 months.
Top view of a stack of broccoli cheddar quinoa bites on parchment paper.
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Broccoli Cheddar Quinoa Bites

By: Rena
Servings: 12 Muffins
Prep: 15 minutes
Cook: 20 minutes
Total: 35 minutes
Overhead shot of several broccoli cheddar quinoa bites arranged on a white background next to some broccoli.
Cheesy, protein-packed bites made with quinoa, broccoli, and two cheeses—perfect for quick breakfasts, snacks, or lunch boxes.

Ingredients

  • Cooking oil spray
  • 1 ½ cups vegetable broth
  • 1 cup quinoa, uncooked
  • 1 small head of broccoli, finely chopped
  • 1 cup shredded cheese, cheddar works
  • ½ cup crumbled feta cheese
  • 1 teaspoon garlic powder
  • 1 teaspoon onion powder
  • 1 teaspoon Italian seasoning
  • Kosher salt and ground pepper, to taste
  • 2 large eggs

Instructions

  • Preheat your oven to 350°F and generously spray a muffin tin with Cooking oil spray. In a saucepan, combine the 1 ½ cups vegetable broth and 1 cup quinoa, then simmer for about 15 minutes, until the quinoa is tender and the liquid is absorbed. Let it cool for 10-15 minutes, fluff with a fork, and transfer to a medium bowl.
    Cooked quinoa in a white pot being fluffed with a fork.
  • Finely chop the 1 small head of broccoli into small, even pieces and add it to the quinoa.
    Finely chopped fresh broccoli on a cutting board with a knife nearby.
  • Add the 1 cup shredded cheese, ½ cup crumbled feta cheese, 1 teaspoon garlic powder, 1 teaspoon onion powder, 1 teaspoon Italian seasoning, Kosher salt and ground pepper, and 2 large eggs to the bowl. Stir until everything is well combined. If the mixture seems dry, mix in an extra egg.
    Mixing bowl filled with shredded cheddar cheese, eggs, chopped broccoli, and seasonings before combining.
  • Spoon the mixture evenly into the prepared muffin tin, gently pressing it down. Bake for 18-20 minutes, until set and lightly golden. Let them cool in the tin for a few minutes before removing.
    Freshly baked broccoli cheddar quinoa bites cooling on parchment paper, sprinkled with cheese.

Notes

  • Chop broccoli small so it cooks through and blends into each bite.
  • Let quinoa cool before mixing to avoid scrambling the eggs.
  • Use silicone muffin liners or grease well for easy release.
  • Add bacon or ham for extra protein.
Storage
  • Store in fridge up to 4 days or freeze up to 3 months.
  • Reheat in oven for crisp edges or microwave for quick meals.

Nutrition

Serving: 1muffinCalories: 117kcalCarbohydrates: 14gProtein: 8gFat: 4gSaturated Fat: 2gPolyunsaturated Fat: 1gMonounsaturated Fat: 1gTrans Fat: 0.003gCholesterol: 39mgSodium: 300mgPotassium: 268mgFiber: 2gSugar: 1gVitamin A: 474IUVitamin C: 45mgCalcium: 109mgIron: 1mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Additional Info

Course: Breakfast, Snack
Cuisine: American
Tried this recipe?Mention @healthyfitnessmeals or tag #healthyfitnessmeals!

More Egg Recipes You’ll Love

If these Broccoli Cheddar Quinoa Bites are your kind of recipe, here are a few more egg favorites I think you’ll love:

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Overhead view of freshly baked broccoli cheddar quinoa bites arranged neatly on parchment paper.
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About Rena Awada

Hi, I’m Rena! Welcome to my blog. I am here to help you prepare delicious, light, fresh meals that your whole family will love!

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